Frequently Asked Questions about the MCP Server for NCBI Databases

Q: What is the MCP Server?

A: The MCP Server is a Model Context Protocol (MCP) adapter for NCBI databases. It allows you to interact with NCBI databases using natural language queries, making it easier to search, retrieve, and analyze data.

Q: What are NCBI databases?

A: NCBI databases are a collection of databases maintained by the National Center for Biotechnology Information (NCBI). They contain a wealth of information related to genetics, genomics, and other areas of biology.

Q: What is Model Context Protocol (MCP)?

A: MCP (Model Context Protocol) is an open protocol that standardizes how applications provide context to Large Language Models (LLMs), enabling seamless communication and data exchange.

Q: How do I install the MCP Server?

A: You can install the MCP Server by cloning the repository, installing the dependencies using pip install -r requirements.txt, and creating a .env file with your NCBI API key and email.

Q: How do I run the MCP Server?

A: You can run the MCP Server by executing the command python ncbi_mcp.py in your terminal.

Q: How do I use the MCP Server with Cursor/Claude?

A: Once the MCP Server is running, you can interact with it using natural language in Cursor/Claude by using the @ncbi-mcp command followed by your query.

Q: What are some example queries I can use?

A: Here are some example queries:

• @ncbi-mcp Find the latest research on COVID-19 vaccines
• @ncbi-mcp Tell me about the BRCA1 gene
• @ncbi-mcp Get genome information for Homo sapiens
• @ncbi-mcp Get gene ID 70

Q: Can I use advanced search filters?

A: Yes, you can use advanced search filters by directly calling the specific tools and providing the appropriate parameters.

Q: What databases can I access with the MCP Server?

A: You can access multiple NCBI databases, including PubMed, Gene, and Genome.

Q: Is the MCP Server open source?

A: Yes, the MCP Server is licensed under the Apache-2.0 license.

Q: How can I test the MCP Server?

A: You can test the MCP Server using the included test files by running the .run_test.bat script.

Q: Where can I find more information about UBOS?

A: You can find more information about UBOS on the UBOS website: https://ubos.tech.

Q: What is UBOS?

A: UBOS is a Full-stack AI Agent Development Platform. UBOS focused on bringing AI Agent to every business department. Our platform help you orchestrate AI Agents, connect them with your enterprise data, build custom AI Agents with your LLM model and Multi-Agent Systems.